NEWS
clustermq 0.9.5
- Fix a bug where an outdated system
libzmq led to compilation errors (#327)
- New option
clustermq.ports specifies eligible port range (#328) @michaelmayer2
clustermq 0.9.4 (2024-03-04)
- Fix a bug where worker stats were shown as
NA (#325)
- Worker API:
env() now visibly lists environment if called without arguments
clustermq 0.9.3 (2024-01-09)
- Fix a bug where
BiocParallel did not export required objects (#302)
- Fix a bug where already finished workers were killed (#307)
- Fix a bug where worker results and stats could be garbage collected (#324)
- There is now an FAQ vignette with answers to frequently asked questions
- Worker API:
send() now reports a call identifier that current() tracks
clustermq 0.9.2 (2023-12-07)
- Fix a bug where SSH proxy would not cache data properly (#320)
- Fix a bug where
max_calls_worker was not respected (#322)
- Local parallelism (
multicore, multiprocess) again uses local IP (#321)
- Worker API:
info() now also returns current worker and number of calls
clustermq 0.9.1 (2023-11-21)
- Disconnect monitor (libzmq with
-DZMQ_BUILD_DRAFT_API=1) is now optional (#317)
- Fix a bug where worker shutdown notifications can cause a crash (#306, #308, #310)
- Fix a bug where template values were not filled correctly (#309)
- Fix a bug where using
Rf_error lead to improper cleanup of resources (#311)
- Fix a bug where maximum worker timeout was multiplied and led to undefined behavior
- Fix a bug where ZeroMQ's
-Werror flag led to compilation issues on M1 Mac
- Fix a bug where SSH tests could error with timeout on high load
- Worker API:
CMQMaster now needs to know add_pending_workers(n)
- Worker API: status report
info() now displays properly
clustermq 0.9.0 (2023-09-23)
Features
- Reuse of common data is now supported (#154)
- Jobs now error instead of stalling upon unexpected worker disconnect (#150)
- Workers now error if they can not establish a connection within a time limit
- Error if
n_jobs and max_calls_worker provide insufficient call slots (#258)
- Request 1 GB by default in SGE template (#298) @nickholway
- Error and warning summary now orders by index and severity (#304)
- A call can have multiple warnings forwarded, not only last
Bugfix
- Fix bug where max memory reporting by
gc() may be in different column (#240)
- Fix passing numerical
job_id to qdel in PBS (#265)
- The job port/id pool is now used properly upon binding failure (#270) @luwidmer
- Common data size warning is now only displayed when exceeding limits (#287)
Internal
- Complete rewrite of the worker API
- We no longer depend on the
purrr package
clustermq 0.8.95 (2020-07-01)
- We are now using ZeroMQ via
Rcpp in preparation for v0.9 (#151)
- New
multiprocess backend via callr instead of forking (#142, #197)
- Sending data on sockets is now blocking to avoid excess memory usage (#161)
multicore, multiprocess schedulers now support logging (#169)- New option
clustermq.host can specify host IP or network interface name (#170)
- Template filling will now raise error for missing keys (#174, #198)
- Workers failing with large common data is improved (fixed?) (#146, #179, #191)
- Local connections are now routed via
127.0.0.1 instead of localhost (#192)
- Submit messages are different between local, multicore and HPC (#196)
- Functions exported by
foreach now have their environment stripped (#200)
- Deprecation of
log_worker=T/F argument is rescinded
clustermq 0.8.9 (2020-02-29)
- New option
clustermq.ssh.timeout for SSH proxy startup (#157) @brendanf
- New option
clustermq.worker.timeout for delay before worker shutdown (#188)
- Fixed PBS/Torque docs, template and cleanup (#184, #186) @mstr3336
- Warning if common data is very large, set by
clustermq.data.warning (#189)
clustermq 0.8.8 (2019-06-05)
Q, Q_rows have new arguments verbose (#111) and pkgs (#144)foreach backend now uses its dedicated API where possible (#143, #144)- Number and size of objects common to all calls now work properly
- Templates are filled internally and no longer depend on
infuser package
clustermq 0.8.7 (2019-04-15)
Q now has max_calls_worker argument to avoid walltime (#110)- Submission messages now list size of common data (drake#800)
- All default templates now have an optional
cores per job field (#123)
foreach now treats .export (#124) and .combine (#126) correctly- New option
clustermq.error.timeout to not wait for clean shutdown (#134)
- SSH command is now specified via a template file (#122)
- SSH will now forward errors to the local process (#135)
- The Wiki is deprecated, use https://mschubert.github.io/clustermq/ instead
clustermq 0.8.6 (2019-02-22)
- Progress bar is now shown before any workers start (#107)
- Socket connections are now authenticated using a session password (#125)
- Marked internal functions with
@keywords internal
- Added vignettes for the User Guide and Technical Documentation
clustermq 0.8.5 (2018-09-29)
- Added experimental support as parallel foreach backend (#83)
- Moved templates to package
inst/ directory (#85)
- Added
send_call to worker to evaluate arbitrary expressions (drake#501; #86)
- Option
clustermq.scheduler is now respected if set after package load (#88)
- System interrupts are now handled correctly (rzmq#44; #73, #93, #97)
- Number of workers running/total is now shown in progress bar (#98)
- Unqualified (short) host names are now resolved by default (#104)
clustermq 0.8.4 (2018-04-22)
- Fix error for
qsys$reusable when using n_jobs=0/local processing (#75)
- Scheduler-specific templates are deprecated. Use
clustermq.template instead
- Allow option
clustermq.defaults to fill default template values (#71)
- Errors in worker processing are now shut down cleanly (#67)
- Progress bar now shows estimated time remaining (#66)
- Progress bar now also shown when processing locally
- Memory summary now adds estimated memory of R session (#69)
clustermq 0.8.3 (2018-01-21)
- Support
rettype for function calls where return type is known (#59)
- Reduce memory requirements by processing results when we receive them
- Fix a bug where cleanup,
log_worker flag were not working for SGE/SLURM
clustermq 0.8.2 (2017-11-30)
- Fix a bug where never-started jobs are not cleaned up
- Fix a bug where tests leave processes if port binding fails (#60)
- Multicore no longer prints worker debug messages (#61)
clustermq 0.8.1 (2017-11-27)
- Fix performance issues for a high number of function calls (#56)
- Fix bug where multicore workers were not shut down properly (#58)
- Fix default templates for SGE, LSF and SLURM (misplaced quote)
clustermq 0.8.0 (2017-11-11)
Features
- Templates changed:
clustermq:::worker now takes only master as argument
- Creating
workers is now separated from Q, enabling worker reuse (#45)
- Objects in the function environment must now be
exported explicitly (#47)
- Added
multicore qsys using the parallel package (#49)
- New function
Q_rows using data.frame rows as iterated arguments (#43)
- Job summary will now report max memory as reported by
gc (#18)
Bugfix
- Fix a bug where copies of
common_data are collected by gc too slowly (#19)
Internal
- Messages on the master are now processed in threads (#42)
- Jobs will now be submitted as array if possible
clustermq 0.7.0 (2017-08-28)