clustermq - Evaluate Function Calls on HPC Schedulers (SLURM, LSF, SGE, GCS, OCS, PBS, Torque)
Evaluate arbitrary function calls using workers on HPC schedulers in single line of code. All processing is done on the network without accessing the file system. Remote schedulers are supported via SSH.
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clusterhigh-performance-computinglsfsgeslurmsshzeromq3cpp
10.76 score 153 stars 1 dependents 293 scripts 3.2k downloadsnarray - Subset- And Name-Aware Array Utility Functions
Stacking arrays according to dimension names, subset-aware splitting and mapping of functions, intersecting along arbitrary dimensions, converting to and from data.frames, and many other helper functions.
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arrayutilitycpp
6.52 score 26 stars 7 dependents 12 scripts 539 downloadspepitope - Extract, QC and Screen Peptide Epitopes
Supports T cell receptor neoantigen co-culture screen analysis from peptide library design to sequencing quality control and differential abundance testing. The package annotates somatic variants and RNA fusions, extracts mutant and reference peptide context, prepares barcoded minigene construct tables, counts sample and construct barcodes from sequencing data, and identifies immunogenic epitopes in dropout screens.
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dnaseqvariantannotationimmunooncologyzlibcpp
4.29 score 4 scripts